Source code for modalysis.client.gff

"""HTTP client calls for GFF endpoints."""

import logging

import requests
from modalysis.constants import DEFAULT_BASE_URL

logger = logging.getLogger(__name__)




def gff_format(
    input_path: str,
    output_path: str,
    output_name: str,
    allowed_chromosomes: list[str],
    base_url: str = DEFAULT_BASE_URL,
) -> dict[str, str]:
    """POST a GFF format request to the server."""
    url = f"{base_url}/gff/format"
    payload = {
        "input_path": input_path,
        "output_path": output_path,
        "output_name": output_name,
        "allowed_chromosomes": allowed_chromosomes,
    }
    logger.info("Client sending GFF format request to %s", url)
    response = requests.post(url, json=payload)
    response.raise_for_status()
    return response.json()





def gff_annotate(
    gff_path: str,
    expression_paths: list[str],
    expression_labels: list[str],
    output_path: str,
    output_name: str,
    base_url: str = DEFAULT_BASE_URL,
) -> dict[str, str]:
    """POST a GFF annotate request to the server."""
    url = f"{base_url}/gff/annotate"
    payload = {
        "gff_path": gff_path,
        "expression_paths": expression_paths,
        "expression_labels": expression_labels,
        "output_path": output_path,
        "output_name": output_name,
    }
    logger.info("Client sending GFF annotate request to %s", url)
    response = requests.post(url, json=payload)
    response.raise_for_status()
    return response.json()