CLI Modules
===========

.. automodule:: modalysis
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.parsers
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.parsers.server
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.parsers.gff
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.parsers.pileup
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.parsers.dmr
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.parsers.plot
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.handlers.server
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.handlers.gff
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.handlers.pileup
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.handlers.dmr
   :members:
   :undoc-members:
   :private-members:

.. automodule:: modalysis.cli.handlers.plot
   :members:
   :undoc-members:
   :private-members: